rs27517958 SNP Detail

Summary

• ID
  rs27517958
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129994579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAAACACA TCACCAGCGA
  GATGAAGGAG CAGCCAGGTT TTAGATGGGG ACAGATGTGG ACGGGGACAG ATGTTAAAGC
  ACTCCCCTTG GAAAACCCAC TTCTACTCTC GGCTCAGACT GTGAGGCAAA CTGCTGAGGG
  GTCCCTGTGA CCAGGAGTCT GTTGGCTCAA GTAGAAAGAA AGAGAAGCAA GGACCAGCTG
  Y
  TGAATGGAGC AGGTTGGCTC TCAAGGCCAG AGGGGGAGAC TGGCATGGGA GACATCAAAG
  GCACACACCC TTTGAGCTGG GGCATCGACC CTTGGAAATG GTGCCTTCCT TCATTTCCCT
  CCTCGGTCAA ATCCATGCTG CCCTCTGGGG GATTCTATGA CAGGCTAGGT TGAAGCTTTC
  AAGATTTGAG TGGCTGTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37717359	NES09173916	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27517958					SNP	T	T	T	T	T	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717359	NES09173916	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129994579 () rs orientation: forward

Symbol	Name	Function Class
Col16a1	collagen, type XVI, alpha 1	1509 bp downstream
Rr600438	regulatory region 600438	313 bp proximal
Rr600439	regulatory region 600439	1282 bp proximal
Rr600440	regulatory region 600440	1783 bp proximal