rs27517955 SNP Detail

Summary

• ID
  rs27517955
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129994686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCAGGTTG GCTCTCAAGG CCAGAGGGGG AGACTGGCAT
  GGGAGACATC AAAGGCACAC ACCCTTTGAG CTGGGGCATC GACCCTTGGA AATGGTGCCT
  K
  CCTTCATTTC CCTCCTCGGT CAAATCCATG CTGCCCTCTG GGGGATTCTA TGACAGGCTA
  GGTTGAAGCT TTCAAGATTT GAGTGGCTGT CTCCCTGGAA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37717356	NES09173919	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27517955					SNP	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717356	NES09173919	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129994686 () rs orientation: forward

Symbol	Name	Function Class
Col16a1	collagen, type XVI, alpha 1	1616 bp downstream
Rr600438	regulatory region 600438	206 bp proximal
Rr600439	regulatory region 600439	1175 bp proximal
Rr600440	regulatory region 600440	1676 bp proximal