rs27517950 SNP Detail

Summary

• ID
  rs27517950
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129996282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGC CATTTGGCTT TGGTTGGTGT
  M
  TGGCTGCTTG AGAGAAGCCT TGGGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37717351	NES09173809	PERLEGEN	MM_PANEL2	f	SNP			A	A	A	A		A	C	C		C	A	A	C
ss45650987	mCV22590593	ABI	CRAMUS_MOUSE	f	SNP	C	C	A				A	A
ss147459892	ENSMUSSNP4758844	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A					A
ss321317065	CHEV_4_129779733	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27517950					SNP	C	C	A	A	A	A	A	A	C	C	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717351	NES09173809	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129996282 () rs orientation: forward

Symbol	Name	Function Class
Rr600438	regulatory region 600438	781 bp distal
Rr600439	regulatory region 600439	within coordinates
Rr600440	regulatory region 600440	80 bp proximal
Rr600441	regulatory region 600441	1331 bp proximal