rs27517949 SNP Detail

Summary

• ID
  rs27517949
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129996300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCCCCT TCCTGCTGAG
  CTGAGACAAT AACAGGAACG CCCCGTTCAC TTCTGTCTGC CTCAGGTGGT TAAGGTTTGG
  AAGTGAGCTC TTTGTTTTTT TTGGTCTTTG AAAGATCTCT CTTTCATCTG CCCCTCCAAA
  ATAAACACAC CTGCCTCCCT GCCATTTGGC TTTGGTTGGT GTATGGCTGC TTGAGAGAAG
  Y
  CTTGGGTGCA CCCTTCTGAC CCCTGAATAA TGCAGACCTC CGACTGTGAG TTCTATTAAG
  CCTTTCACTG GAATAAAAGA ATGCCAAGAA TTTTCACGGG GTGGGTGAGA TTGGTGAGCT
  CAGTGGTTGC TGGCAACAAA GATGACGTGG CTCTGTTCTT GGGACACACA TGGTGGAAGG
  AGAGAACTGA CTCCCGGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37717350	NES09173810	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27517949					SNP	C	C	C	C	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717350	NES09173810	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129996300 () rs orientation: forward

Symbol	Name	Function Class
Rr600438	regulatory region 600438	799 bp distal
Rr600439	regulatory region 600439	within coordinates
Rr600440	regulatory region 600440	62 bp proximal
Rr600441	regulatory region 600441	1313 bp proximal
Rr600442	regulatory region 600442	1995 bp proximal