rs27517945 SNP Detail

Summary

• ID
  rs27517945
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129997107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGAAGAA CTGATTGCAA
  GTAAGTGTCC TCCGACCTCC ACATGCGCAC GACAACCTTT GAGTCAAATT ACTGCTCATC
  TCTGCACGGA GCTGTGCCAG TCATCTAAGG AATGTTCTAC AGAACTGGGA GTCTTCCCCA
  TTCAAGACCA AAGTCAACAA GGTGAGAGTG GCTGAGGTAT ATTCAAGATT TGAAGAGACG
  W
  CATAACATTG TCAGAGAAGG CAAGGACTTA GGAAATTGGG AGGGGGGGGG CACATACTCC
  AAGAGGAAGC CATCAAATGA GAAAATCCCA GCCAGCCATC TTCTGCCTTG GAACTTTAAA
  TTGACCACAA TGCTAAAAGG TGAATGGACA ACAGTAGAGA TCCCAACCCG CCATCCCTTC
  CTCGCCCAAG CTAATGGAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37717346	NES09173750	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T		T	A	A	T
ss321317077	CHEV_4_129780558	CHEVERUD	SCREENING_POP	f	SNP								A					T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27517945					SNP	A	A	A	A	A	A	T	A	T	A	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717346	NES09173750	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129997107 () rs orientation: forward

Symbol	Name	Function Class
Rr600438	regulatory region 600438	1606 bp distal
Rr600439	regulatory region 600439	746 bp distal
Rr600440	regulatory region 600440	247 bp distal
Rr600441	regulatory region 600441	506 bp proximal
Rr600442	regulatory region 600442	1188 bp proximal
Tssr39229	transcription start site region 39229	1572 bp upstream