rs27517944 SNP Detail

Summary

• ID
  rs27517944
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129997323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGCAAGG ACTTAGGAAA
  TTGGGAGGGG GGGGGCACAT ACTCCAAGAG GAAGCCATCA AATGAGAAAA TCCCAGCCAG
  CCATCTTCTG CCTTGGAACT TTAAATTGAC CACAATGCTA AAAGGTGAAT GGACAACAGT
  AGAGATCCCA ACCCGCCATC CCTTCCTCGC CCAAGCTAAT GGAAGCTAAA CTCATAGACG
  Y
  GTTAGCTCTT GCCTGTCGAA AACACCGACC CTTCTGAACA GTTCTTTGAC TGCAAAATGA
  AAGGAACTGT AATAGAAGGT GGCTGTTTCT TCTTTGACCG GCCAGAAGAG ACAGAGCCTG
  GGCTTTGAAT CTAAGGCTCA TCTCGTTCTG GGGCACTCAC ATTTACACAA GAGCTGGAAG
  GAACCAGTTT GTCTGTTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37717345	NES09173751	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27517944					SNP	C	C	C	C	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717345	NES09173751	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129997323 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	1925 bp downstream
Rr600438	regulatory region 600438	1822 bp distal
Rr600439	regulatory region 600439	962 bp distal
Rr600440	regulatory region 600440	463 bp distal
Rr600441	regulatory region 600441	290 bp proximal
Rr600442	regulatory region 600442	972 bp proximal
Tssr39229	transcription start site region 39229	1356 bp upstream