rs27517943 SNP Detail

Summary

• ID
  rs27517943
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129997446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGAATGGA CAACAGTAGA
  GATCCCAACC CGCCATCCCT TCCTCGCCCA AGCTAATGGA AGCTAAACTC ATAGACGCGT
  TAGCTCTTGC CTGTCGAAAA CACCGACCCT TCTGAACAGT TCTTTGACTG CAAAATGAAA
  GGAACTGTAA TAGAAGGTGG CTGTTTCTTC TTTGACCGGC CAGAAGAGAC AGAGCCTGGG
  Y
  TTTGAATCTA AGGCTCATCT CGTTCTGGGG CACTCACATT TACACAAGAG CTGGAAGGAA
  CCAGTTTGTC TGTTTTGTTC CCCCCTCCCC GCAAGCGTAT TTTTTATTTC ATTCATATGA
  GTGTTTTGCT TGTGTGCCTG TGCACCACAC GGATGCAGTG CCGGTGGATG CCAGCAGAGG
  GCACTGGATC CAGTCAATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37717344	NES09173752	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C		C	C	T		T	C	C	T		C
ss45681455	mCV22590580	ABI	CRAMUS_MOUSE	f	SNP	T	C				C	C
ss147459900	ENSMUSSNP2763182	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C					C
ss321317078	CHEV_4_129780897	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27517943					SNP	T	C	C	C	C	C	C	C	T	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717344	NES09173752	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129997446 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	1802 bp downstream
Rr600438	regulatory region 600438	1945 bp distal
Rr600439	regulatory region 600439	1085 bp distal
Rr600440	regulatory region 600440	586 bp distal
Rr600441	regulatory region 600441	167 bp proximal
Rr600442	regulatory region 600442	849 bp proximal
Tssr39229	transcription start site region 39229	1233 bp upstream