rs27517941 SNP Detail

Summary

• ID
  rs27517941
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129997745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTTTATT TCATTCATAT
  GAGTGTTTTG CTTGTGTGCC TGTGCACCAC ACGGATGCAG TGCCGGTGGA TGCCAGCAGA
  GGGCACTGGA TCCAGTCAAT CCAGATTTAC AGACCGCTGT GAGCCACTGT GTGGGTGCTG
  GGAACTGAAC CCAGCTCCTC TAGAAGAGCA GCGGCGCTCT TACCCGCGGG GTCACCTCAT
  S
  CCTCACCCTT TCATGTAAAG TGCGCTGCCC TCCCTTCTCC GCAGCTCTGC TTTCCTCAGA
  AGCTCAGCCT CTGGTCTCTG AGTCTTTTTG GAGAGGAGCT CTAGAAAATG TCTGACTTGA
  GGCTACCTCA GACTCTCCAG TAGTCTGCCA ACTGCTAGCT TTTCTAGTTT TGTTTTTAGA
  CGGTTTCACT ACGCAGCCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37717342	NES09173733	PERLEGEN	MM_PANEL2	f	SNP			C	C	C	C		C	C	G		G	C	C	G		G
ss45707431	mCV22590569	ABI	CRAMUS_MOUSE	f	SNP	G	G	C				C	C
ss147459910	ENSMUSSNP5467690	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C					C
ss321317082	CHEV_4_129781196	CHEVERUD	SCREENING_POP	f	SNP											C					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27517941					SNP	G	G	C	C	C	C	C	C	C	G	C	G	C	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717342	NES09173733	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129997745 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	1503 bp downstream
Rr600439	regulatory region 600439	1384 bp distal
Rr600440	regulatory region 600440	885 bp distal
Rr600441	regulatory region 600441	111 bp distal
Rr600442	regulatory region 600442	550 bp proximal
Tssr39229	transcription start site region 39229	934 bp upstream