rs27517915 SNP Detail

Summary

• ID
  rs27517915
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:130004144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTTC CTGTAATTTT CCATTGCCTC
  Y
  GGCCCAGGGT GCACAGGCGC TGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37717316	NES09173439	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	T	C	C	C	C	C	T
ss45595537	mCV22590326	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C		C
ss147460096	ENSMUSSNP2258421	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27517915					SNP	T	T	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717316	NES09173439	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130004144 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	within coordinates
Pef1	penta-EF hand domain containing 1	Intron
Rr600446	regulatory region 600446	902 bp distal
Rr600447	regulatory region 600447	within coordinates
Rr600448	regulatory region 600448	1985 bp proximal
Tssr39232	transcription start site region 39232	1944 bp downstream