rs27517910 SNP Detail

Summary

• ID
  rs27517910
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:130004411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGAGCCT CCTTGATGGA
  ACTCAGTGCT TAAGAGCTTG GTCTCTGGTT GGCACATCCC TACTCTGCCA ACTTGCTTAC
  AGAAATTGGT TGTGAAGACC TGAAGTTTGG TTTCCTGTTC TGTAGAATAG GGTCATAGCA
  GTGCCTACAC CAGACTTCAC TGTGACATGA GATAGAGTCA AGTGTGGCAT GTAGTAAGTA
  Y
  TCCGCCTGGG AGAGGAGTGC AGAGATGGAG ACTCTAAGTG TTAAGTGGGA GTGGGTTTAA
  GGTGTTAGGA TAGTACAGGA GCGCAGCCCA GGGGTGGGGC AGGAAGGTGT AAGCTGGGGG
  AATAAGAAAG TGACATTCCA GCTAAGGAAA TACTGTCACA AAGACCAGGA AGCAAGCAAG
  AAAGTGCAGT CCATAGTACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37717311	NES09173415	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27517910					SNP	C	C	C	C	C	C	C	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717311	NES09173415	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130004411 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	within coordinates
Pef1	penta-EF hand domain containing 1	Intron
Rr600446	regulatory region 600446	1169 bp distal
Rr600447	regulatory region 600447	180 bp distal
Rr600448	regulatory region 600448	1718 bp proximal