rs27517891 SNP Detail

Summary

• ID
  rs27517891
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:130006620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTTCTGTG GTGCTCTGCT TTCTCCCACA TAACTCTGCA
  GAGCAGTGCG TCTCTGTATA TAAGCACTAT ATATGGAGAC TTACAGGTAC CAGGCACTGT
  K
  CTGGGCCTGC TGCAGGTGAG GATGGTGGTG GATGAGGGTG GTGGTGGTTA TGATGATGGT
  GATGGTGATG ATGAAAGAAA CTCTGCCTGC CCCTAGGGAA                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37717289	NES09173307	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27517891					SNP	G	G	G	G	G	G	G	G	G	T	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717289	NES09173307	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130006620 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	830 bp upstream
Pef1	penta-EF hand domain containing 1	Intron
Rr600448	regulatory region 600448	170 bp distal