rs27517890 SNP Detail

Summary

• ID
  rs27517890
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:130006867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATGATGA TGGTGATGGT
  GATGATGAAA GAAACTCTGC CTGCCCCTAG GGAACTTCCT GTTGGGTGAG GGAGACATTG
  GACAGGCACA GATAACTCAC CCACCAACTG AAAAGCAGCT GGAGTGGTGC TTGACCAGGG
  AGGGTGTAAC AGGCCTTCCT TTCTGGGTTC ACTGTGTGCT CTTGCCATTC CCTGACCACA
  Y
  CAGGCTCAGG CATAAGTCTG CTTTGTCTGT CTTCTTGTGG GTATAGTGTC CCTCTCTGCT
  TCTTTGTCTG TCTTCTTGTG GGTATAGTGT CCCTCTCTGC TTCTTTTGGT AGAGAATACC
  TCTGCATCTT TCAAAGACCG GCATGTCACT ACTAGCTTTG ACCAAAGCAA TTTTGGGGGG
  AGAGGGATAG ATAAATACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37717288	NES09173294	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27517890					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717288	NES09173294	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130006867 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	1077 bp upstream
Pef1	penta-EF hand domain containing 1	Intron
Rr600448	regulatory region 600448	417 bp distal