rs27517889 SNP Detail

Summary

• ID
  rs27517889
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:130007303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGGTTTG TGCTCTTCCA
  AACTTATGTA GGGATGGGAC ATGGGACACT CTGGGCCTCC AGAGCCCCTA GCTAGTAGTG
  CACAGAGGTA GACAGGAGAG GAAATGTGGC TATAAAAGCT GCTGGTCTCT TCCAGGGGAC
  CTAGCTTCTT CACCCGGCTC CACACAGTCT ATGTGTGACT TCTCTGAACT CAGGTTTCCT
  Y
  TCCTCTAGAG GGGCACTGTC ATTAATAGTC ACTGCTTGTG AAGATCTTGT TCCATCAGGC
  TTCGTGTGAT GAGCCTCATT TCATTCCTGT AGCAAACAGT ATGAAGCAGG CACTGTTACC
  TCAGGCTCCT GAGGCTTAGT GAAGGTAAGT GAGCTCCCAG TGCGCTGATA CGTTTTCCTG
  AAACTACCTC TTTCATTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37717287	NES09173295	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27517889					SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717287	NES09173295	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130007303 () rs orientation: forward

Symbol	Name	Function Class
Gm40258	predicted gene, 40258	1513 bp upstream
Pef1	penta-EF hand domain containing 1	Intron
Rr600448	regulatory region 600448	853 bp distal