rs27517885 SNP Detail

Summary

• ID
  rs27517885
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:130007869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACCCAAG CGAAATGCAG
  AGCTTTCCGT TTAAGTTATA CACTCCCATG CCCTGACCCA GAACAGTGTC TGTGTTGTAG
  TTATTTGCTG GAGCAGCCAA TGTCTCTGCA AGGTTTTAAG CACTGTTCTG GGGCAATGAA
  ATAACTTCTT ATAAAACCCT GCTAAAGATC TCTGCAGAAA AGTGTTCCTT AAGAGCTGCA
  W
  GGTGGGCTGG TGAGATGGCT CAGTGGGTAA GAGCACCCGA CTGCTCTTCC GAAGGTCAGG
  AGTTCAAATC CCAGCAACCA CATGGTGGCT TACAACCATC CGTGACGAGA TCTGACTCCC
  TCTTCTGGAG TGTCTGAGGA CAGCTACAGT GTACTTAAAT CAATCAATCA GTCAATCAAT
  CAATCAATCA ATCAATCTTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37717283	NES09173273	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27517885					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37717283	NES09173273	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130007869 () rs orientation: forward

Symbol	Name	Function Class
Pef1	penta-EF hand domain containing 1	Intron
Rr600448	regulatory region 600448	1419 bp distal