rs27517146 SNP Detail

Summary

• ID
  rs27517146
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119961165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGAAGAA AAGCAAGGGA
  AGGCGGAGGA AGGTACTCCC ACTTCCAAGA GAGGCGAGCC GGCGAGGGTC AAGATCTTCG
  AAGGAGGGTA AGTTTCATGC TTTTATTTGC AGTCTGCTTC CTGTGTGGAG ACCTTCTACC
  ACCTGCGCGC AGAAGTGGCC AGTGACTCCT GGCTGTGGGC TGCCCAAAGG TACCTATAGT
  M
  CTCACAGGCC CTCCCTATAC TTTGGGACTC CAAGGCCATC TGTTTTGCAA ATGCTACCAG
  GAATCCTTGG TGATGATCTG AAGGAGCCAA GGTCTTTCTC CAGCCCTGTG TCCACAGATC
  TTGTCCAGGT TCTCACCCAG CATTGAAGTG ATGTAGAGTC CTCAGCTCCA CATCAGTCTA
  CACTATTGTT TCCTTTAGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37714075	NES09199875	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27517146					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714075	NES09199875	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119961165 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr598727	regulatory region 598727			750 bp proximal
Rr598728	regulatory region 598728			850 bp proximal