rs27517143 SNP Detail

Summary

• ID
  rs27517143
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119961657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCCCACT GGCAGGTCCA
  CTCTAGGACA CACCCCATGT ACCCCAGGCT CTAGAGGGGC ACCTGGATTC AGATGTACTT
  TGTGGAAGGT CTTTGTGCAC TTTTTGTTCT GTGTGGCCAC GTGTTTGTGA GCAGGTCCCA
  TGGTGTCTGT CTTGGGGTCC TATGTCTGTG TCCCTGTTGT GATCAGGGTG GTACCGATTC
  K
  CTACAGTTCT GATGAAAGCA ATCTCCATAA GCCTCTGATA ACATGGGACA TCAGTGGGGA
  CTCTTGCTCT CCAGCATCTG TAAGTGACTA CCTCATGGGA ACACACAGTG ACAACTGTGG
  GAGTCTCTGG AAAGTTGGCA TTTTGGAGTG GCTAGAAGGG CTCGTGGGGA CAGGCAGTGG
  TTTTGACAGG TACAGGGTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37714072	NES09199878	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27517143					SNP	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714072	NES09199878	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119961657 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr598727	regulatory region 598727			258 bp proximal
Rr598728	regulatory region 598728			358 bp proximal