rs27517139 SNP Detail

Summary

• ID
  rs27517139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119962164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACCCTCT TTCCACTTGG
  GTACAGTGGC TTCCCATGCC TACATTTGGC TAGAGCGCCC TCATGTGGCT ATGTGCCCTC
  ATGCCACTTG GTTCCAAGCT CCAGGCTTGG CAGCTTTGCC CCTTCATCCT CCTCCTGGGT
  GAAGGGGATA GCAACAGGCT TGTACCAACG CCCTAAGCCC CATAAGGCCA AGGAAGGATA
  Y
  GGTTCCCACA GACCTATCAC ATGGACACCG ACCAGCCCCT CTCCTGTGCC CAGATCTTTG
  TCCCCATCTG AAGCACCTCA CTCTGCTCTT GGCTGTGGGG AGTGTCATCC TTGTGCTTCT
  AGCTGGTCAC ATGGTATCGA TAATCAGGTT CTTTCCATCC TCAGCTCAGC TGCCCCTCAC
  CCTGACTCTA AGATCTACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37714068	NES09199883	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27517139					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37714068	NES09199883	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119962164 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr598727	regulatory region 598727			25 bp distal
Rr598728	regulatory region 598728			128 bp distal