rs27516918 SNP Detail

Summary

• ID
  rs27516918
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129187173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTGGAGC ACAGGCTGCT
  CTTTCACGGC CATCATCTCT CTTGCAGGGA ACCACACACC GAGGCGAGTT TTCCTCTTCA
  GGAGTCAGAA TCCCCGAAGG AGGCCAAGAC CTTTAACCCA GAGGCCACTC TGTCTTTGGA
  GGGGACTGTG AACCTAGAGG ACATTCTCTA TCTGGGGGCA TCGGGGGACT TTGAAGAGAG
  Y
  TTTTATGAGG AAGAATATGA GAAGCCAGCA CTGACACTGT TTATCGACGA ATCGAGGCAG
  CCAGACGAGG CGCTGGGCCT AGAAGAGCCC GTGCGCCCAG AGGAGATGCT GTCTGTGGAG
  GAATCCGTGA CGCCAGATGA GGTGCAAATT TCAGAGCAGC CTGTGGAGCC AGCTAAGAGC
  CCAACTGCTT GTGAGGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss37720146	NES09230339	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	C		C	T		T
ss321311688	CHEV_4_128970624	CHEVERUD	SCREENING_POP	f	SNP							T			C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs27516918					SNP	T	T	C	T	T	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37720146	NES09230339	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129187173 () rs orientation: forward

Symbol	Name	Function Class
Rr600195	regulatory region 600195	1844 bp proximal
Sync	syncoilin	Coding-Synonymous