rs27516916 SNP Detail

Summary

• ID
  rs27516916
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129187300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTCTTT GGAGGGGACT
  GTGAACCTAG AGGACATTCT CTATCTGGGG GCATCGGGGG ACTTTGAAGA GAGTTTTTAT
  GAGGAAGAAT ATGAGAAGCC AGCACTGACA CTGTTTATCG ACGAATCGAG GCAGCCAGAC
  GAGGCGCTGG GCCTAGAAGA GCCCGTGCGC CCAGAGGAGA TGCTGTCTGT GGAGGAATCC
  K
  TGACGCCAGA TGAGGTGCAA ATTTCAGAGC AGCCTGTGGA GCCAGCTAAG AGCCCAACTG
  CTTGTGAGGG AGAAATGGTG GCCACGGAGG GAAGCCTGCC TGCTCAACCG ATTCCCAACA
  CCGAGGAGGA TCCCCTCAGC GTGGAGGACC TGGAGCGGCT GGAAGCTCGT TTCCAGCAGT
  GTGTACAAGC CGTGTCCCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37720144	NES09230341	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27516916					SNP	G	G	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37720144	NES09230341	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129187300 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14888	CpG island 14888	within coordinates
Rr600195	regulatory region 600195	1717 bp proximal
Sync	syncoilin	Coding-NonSynonymous