rs27516913 SNP Detail

Summary

• ID
  rs27516913
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129187671 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAGCAGT GTGTACAAGC
  CGTGTCCCAG CTGGAAGAGG AGAGGGACCA GCTAATCCAC GAGCTCGTGC TACTCCGGGA
  GCCAGCCCTG CAGGAGGTGC AGCAAGTCCA CCAGGACATC CTGGCTGCCT ACAAGCTCCA
  CGCACAGGCA GAGCTGGAGA GGGACGGGCT CAGGGAGGAG ATCCGGACGG TGAAGCAGAA
  R
  CTGTTCAAGG TGACCAAGGA ATGCGTGGCT TACCAATACC AGCTGGAGTG CCGTCAGCAG
  GATGTGGCTC AGTTTGCCGA CTGCAGGGAA GCGCTGACCA CTCGGGCAGC CCAGCTCTCG
  GAAGAACTGA CCCAGCTCCG AGATGCCTGT CAGAAGCAGA AGGAGCAGTT ACAGCAACAA
  CTAGAAGCAC CCCCGACCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss37720141	NES09230344	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A		A	G		G
ss321311694	CHEV_4_128971122	CHEVERUD	SCREENING_POP	f	SNP								G			A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs27516913					SNP	G	G	G	G	G	G	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37720141	NES09230344	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129187671 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14888	CpG island 14888	within coordinates
Rr600195	regulatory region 600195	1346 bp proximal
Sync	syncoilin	Coding-Synonymous