rs27516910 SNP Detail

Summary

• ID
  rs27516910
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129188139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCGCCAGG GCCTGGAGGA
  GGAGTATGAG CCTCAGCTGC TCCGGCTCCT GGAAAGGAAA GAGGCCGGGA CCAAAGCTCT
  ACAGGACACC CAGGCGGAGA TCCAGGAGAT GAGGGAGGCT CTGCGACCCC TGGAAGCAGA
  GGCCCGGCAG CTCCAACTTC AGAACAGGAA CCTGGAGGAC CAGATCACGC TCGTGAGGCA
  R
  AAACGCGATG AAGAGGTTCA ACAGTACAGG GTAGGCCCTT GGCTGTGCAA CAGACAAGTT
  TTATTATGTA GTTCAGGTTG GCCTGGAGAC CTTGAGAAAC TTGAGACCTT CCTGCCTCAG
  CCCTCTGAGT GCTGGGACCA TAGGTGTGTG CCACCACACC CAGCTGAAGG GACATATTTT
  AGCTCAAGGG AAGTCTGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37720138	NES09230347	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	G		G	A	A		A
ss321311699	CHEV_4_128971590	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27516910					SNP	A	A	A	A	G	A	A	G	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37720138	NES09230347	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129188139 () rs orientation: forward

Symbol	Name	Function Class
Rr600195	regulatory region 600195	878 bp proximal
Rr600196	regulatory region 600196	1559 bp proximal
Sync	syncoilin	Coding-Synonymous