rs27516909 SNP Detail

Summary

• ID
  rs27516909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129188544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTTCTCC TTCTGAGACA
  GGGTCTCTCT GTGTAGCCCT GGCTGTCCTG GAACTCACTC TGTAGACCAG GCTGAACTCA
  GACTTCCAGA TCCACCTGCC TCTGTTTCCT GAGTGTTGGG ACTAGAGGTG GGGCATACCA
  CACCCAGATA GGTCTAATAA TGTCTTTGGG GCTAGGGGTT ACTTACCATC CAGTACTACA
  R
  AAAAACCTGT TCTTTGGGCC CATTCATTCT ATTATTATTA TCATTATTAA TTCTATTATT
  ATTATTATTA ATTATTTCAT ATACTATATC CATACCACAG CCTCCCATTC TCTCCATTCC
  TCCTAGTCTA CCCCCCACCC CCCAACTCAT TCTTTTTTTC CTTTAGTTAG GGTAGGGTTA
  GGATTAGGAT TTTTTGTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss37720137	NES09230313	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	A		A	G		G
ss321311706	CHEV_4_128971995	CHEVERUD	SCREENING_POP	f	SNP								G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs27516909					SNP	G	G	G	A	G	G	A	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37720137	NES09230313	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129188544 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14888	CpG island 14888	592 bp distal
Rr600195	regulatory region 600195	473 bp proximal
Rr600196	regulatory region 600196	1154 bp proximal
Sync	syncoilin	Intron