rs27516908 SNP Detail

Summary

• ID
  rs27516908
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129189541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGAGACA GGGTCTAAGT
  TGTCTAGCCT AGTCTTGAAC TCACCCAGTA GCTCGGGCAG GCCCTGAGTT TGAGATCTTT
  CTGCTTCAGC CTCCCATGTA GCTGGGATTA CAGACCTATG CTACCTGGGT AAAATGGGCT
  GCCATACCTG GCTTGGATTC TTATATTCTT TTTTTTATAG ACAATGAACT GGAGGCTCAG
  Y
  GCAGTCCTTT GAGGTTGGGC CTGACCAGCC CTAGGTGTTT CTGTGCTTCA TCTTCAAGTC
  TAACTGACCT GTGACTCGTG CTTGGCTATA GAGAGGGTTA GAACGGCCCA GCACAGGAGC
  TCATACCATG CTCTGCCAGG CACACTGACC TTGGAACCAC TGATCCAGCC TCCACCTTGA
  AGCTGTGCGG ACTCTGGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss37720136	NES09230278	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T		T	C		C
ss321311712	CHEV_4_128972992	CHEVERUD	SCREENING_POP	f	SNP								C			T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs27516908					SNP	C	C	C	C	C	C	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37720136	NES09230278	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129189541 () rs orientation: forward

Symbol	Name	Function Class
Rr600195	regulatory region 600195	136 bp distal
Rr600196	regulatory region 600196	157 bp proximal
Sync	syncoilin	Intron