rs27516907 SNP Detail

Summary

• ID
  rs27516907
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129189591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCGGGCAG GCCCTGAGTT
  TGAGATCTTT CTGCTTCAGC CTCCCATGTA GCTGGGATTA CAGACCTATG CTACCTGGGT
  AAAATGGGCT GCCATACCTG GCTTGGATTC TTATATTCTT TTTTTTATAG ACAATGAACT
  GGAGGCTCAG CGCAGTCCTT TGAGGTTGGG CCTGACCAGC CCTAGGTGTT TCTGTGCTTC
  M
  TCTTCAAGTC TAACTGACCT GTGACTCGTG CTTGGCTATA GAGAGGGTTA GAACGGCCCA
  GCACAGGAGC TCATACCATG CTCTGCCAGG CACACTGACC TTGGAACCAC TGATCCAGCC
  TCCACCTTGA AGCTGTGCGG ACTCTGGGAT GGAATCTCTT TCTCGGCGTT TTCCATTTTT
  GCACATGTCA CCATATCCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss37720135	NES09230279	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	A	C		C	A		A
ss321311714	CHEV_4_128973042	CHEVERUD	SCREENING_POP	f	SNP								A			C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs27516907					SNP	A	A	A	C	A	A	C	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37720135	NES09230279	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129189591 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14888	CpG island 14888	1639 bp distal
Rr600195	regulatory region 600195	186 bp distal
Rr600196	regulatory region 600196	107 bp proximal
Sync	syncoilin	Intron