rs27516906 SNP Detail

Summary

• ID
  rs27516906
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:129189788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATCTTCA AGTCTAACTG
  ACCTGTGACT CGTGCTTGGC TATAGAGAGG GTTAGAACGG CCCAGCACAG GAGCTCATAC
  CATGCTCTGC CAGGCACACT GACCTTGGAA CCACTGATCC AGCCTCCACC TTGAAGCTGT
  GCGGACTCTG GGATGGAATC TCTTTCTCGG CGTTTTCCAT TTTTGCACAT GTCACCATAT
  Y
  CCTGTATTCC TGTTATTTCT GATTAAGTGT GAGCCAGTTC TAACCCCGTT TTAGAACAGA
  GTAGGATATA AATACGGAGT GGATAAACAT TTGCGTGTGC CGCGGCAGGC TGGGTGGACA
  GGAGGCAGCA GCTATCTTTA CTTGTCTCCT GGTCTGCCAC GGAGCTTAGG GGACACAGCA
  GGCCAATGTC AGATGTTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss37720134	NES09230281	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs27516906					SNP	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37720134	NES09230281	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129189788 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14888	CpG island 14888	1836 bp distal
Rr600195	regulatory region 600195	383 bp distal
Rr600196	regulatory region 600196	within coordinates
Rr600197	regulatory region 600197	1881 bp proximal
Sync	syncoilin	Intron