rs27516354 SNP Detail

Summary

• ID
  rs27516354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:120528021 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAGATTG TTGTCTTCAG
  AGTCTACATT CACAGAGGAT AGGAGGAAGC CCAAAGGAAC CTAAGTCACG TAGCCAACCC
  AGCAAGAGTC AGCCAGCCCT GTGCAGAACT CTGAAGCTAG AGTTGATCCA GGTTAGACCA
  GTACACTCCT CCCTGCTTCT GTCCCATCAG TCATGGAATT GCAGGCTGCT CTAGAGTTGG
  Y
  ATGGCCCTGG CTGGGTAGGG CATCCCTCTA CAGATGAGCC ACATGCCCAA AGGGACTTCG
  GGGAAAGGCT GCTACTTCCC TGTTAGGGCA ACAGTTCCAC AAAGGGGAAC TGAGTGCCCT
  CCACAAACAC CAGGGTCCTA CAAGTGTCTC CTCACAGTTA CAGTGCACAT GTGTCATCGG
  CGACCCCTTG GTCCCCGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37712189	NES09207813	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27516354					SNP	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37712189	NES09207813	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:120528021 () rs orientation: forward

Symbol	Name	Function Class
Rr598842	regulatory region 598842	813 bp distal
Rr598843	regulatory region 598843	356 bp distal