rs27516349 SNP Detail

Summary

• ID
  rs27516349
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:120528402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAATC AGCCTTTTCC CAGGCAGCTT
  M
  CGCGGTTTAG CTGACTCCTG GGTGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss37712184	NES09207818	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	C			C		A	C
ss45676119	mCV24855051	ABI	CRAMUS_MOUSE	f	SNP		C	A			C	A
ss147346080	ENSMUSSNP54125	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A				A
ss321286015	CHEV_4_120343810	CHEVERUD	SCREENING_POP	f	SNP									A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs27516349					SNP	C	C	A	C	C	C	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37712184	NES09207818	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:120528402 () rs orientation: forward

Symbol	Name	Function Class
Rr598842	regulatory region 598842	1194 bp distal
Rr598843	regulatory region 598843	737 bp distal