rs27516347 SNP Detail

Summary

• ID
  rs27516347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:120528820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGCTCCT GCTTCAGTAT
  CCACCCACCC CGTCAGGAGT TCTTCCCGGT AGTTTGACTC TATTTCAGAG GTCAAGAAAC
  TGGGGCACAG TGAATTAGTC CAAGGCACAC CCTAGCTCTG CAGGGCCTGC CCATACCCAC
  GATGAGTCTG GGGAAGGAAC TGAATATAAG TGAAAGAACA GAGTCCCAGC CCGAGCTTGC
  Y
  GCTCTGTGCC TGTGAGATGC AGAGGTGACT GAAGCTCCCA AGGACTTGGT TTTCTTTCTC
  CATATAAGAG AAGAGTTACA CCGACAATAA AGGTGCATGT TAGGAGGACT CAGATGAGCT
  GGGTCCTGAG AAGACGTTGT AGTTGGTGCA GTGAGGGGCC GGAGAGATGG CAAAGGAGGT
  AAGGCACTGG CTGCTCTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37712182	NES09207820	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27516347					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37712182	NES09207820	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:120528820 () rs orientation: forward

Symbol	Name	Function Class
Rr598842	regulatory region 598842	1612 bp distal
Rr598843	regulatory region 598843	1155 bp distal