rs27515991 SNP Detail

Summary

• ID
  rs27515991
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119668325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAAACTGG AAAGTCTGTC
  TGTCTGTCTG TCTGTCTGTC TGCCTCTCCC TCTCTGTGTC TCTCTCTCTG TTCTTTTATA
  GGTAAGTGAT GAAATCGGTA GCAGGTGATG TTACAGAAGA GAGGGAATAC TACATATTTA
  AATCATTTGA CTCTCATTTC TCAAAATGTT TAATAATTAT GTGCTGTCAA TTCTGTACTC
  R
  ACTTTACATT TTACCTGGCT TCATTCCACA TTACATTTCT TACATAATAA CCTCTCTTTG
  TGTGAGTTCA TTTTCCTGGC CTGTTTTCAC CCTTGCTTAA GCAGAGATCT TCAAGTTACC
  TACAGAAGCT TTTCTTAATA AAGGGTATGC CAGTGATGCC CTGTCTCTAT TTTATCGTCA
  CACAGAGGGC AATGCTAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss37715117	NES09198912	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs27515991					SNP	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37715117	NES09198912	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119668325 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr398435	regulatory region 398435			1714 bp upstream
Rr598653	regulatory region 598653			1448 bp distal
Rr598654	regulatory region 598654			1671 bp distal
Rr598655	regulatory region 598655			1545 bp proximal
Tssr38753	transcription start site region 38753			1928 bp upstream