rs27515990 SNP Detail

Summary

• ID
  rs27515990
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119668502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTGCTGT CAATTCTGTA
  CTCGACTTTA CATTTTACCT GGCTTCATTC CACATTACAT TTCTTACATA ATAACCTCTC
  TTTGTGTGAG TTCATTTTCC TGGCCTGTTT TCACCCTTGC TTAAGCAGAG ATCTTCAAGT
  TACCTACAGA AGCTTTTCTT AATAAAGGGT ATGCCAGTGA TGCCCTGTCT CTATTTTATC
  R
  TCACACAGAG GGCAATGCTA GTGTGACAGC TAGTGTGGTT TCAGTGCATT TCTTTGGAGT
  CCCCAGTAAG CATTGTGCGG GTGTATCTGT GAGCCGCATT TTAGAAGGGG ACCAGAAAGT
  CATTCTGAGT TTATTTCTTT TACGCAGTCA GCTCCTTCTC CCTTCTGAGT ACGTTTGTGG
  TTGTGTCTCT TTGCTCTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37715116	NES09198913	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27515990					SNP	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37715116	NES09198913	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119668502 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr398435	regulatory region 398435			1537 bp upstream
Rr598653	regulatory region 598653			1625 bp distal
Rr598654	regulatory region 598654			1848 bp distal
Rr598655	regulatory region 598655			1368 bp proximal
Tssr38753	transcription start site region 38753			1751 bp upstream