rs27515988 SNP Detail

Summary

• ID
  rs27515988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119668702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACACAGA GGGCAATGCT
  AGTGTGACAG CTAGTGTGGT TTCAGTGCAT TTCTTTGGAG TCCCCAGTAA GCATTGTGCG
  GGTGTATCTG TGAGCCGCAT TTTAGAAGGG GACCAGAAAG TCATTCTGAG TTTATTTCTT
  TTACGCAGTC AGCTCCTTCT CCCTTCTGAG TACGTTTGTG GTTGTGTCTC TTTGCTCTTG
  R
  GGTTCTGCAT CTCTGAATGT GTTTGCTTGC TCAACAACGC TGCTGCCAGC ACACCTTGTG
  ACCTGCATCC AACTCTTCAG CTGAAGGGGA CAGCCTTTTG CTTCTGTGTT TCTGCTTCTC
  CTTGGTGCTG CTATTCCTTC AGAACTCCTG CTGGGTAATC CCAACCCCTT TGCACATGCT
  CTGTGCTTTA TCTGGTTACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37715114	NES09198915	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27515988					SNP	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37715114	NES09198915	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119668702 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr398435	regulatory region 398435			1337 bp upstream
Rr398436	regulatory region 398436			1895 bp upstream
Rr598653	regulatory region 598653			1825 bp distal
Rr598655	regulatory region 598655			1168 bp proximal
Tssr38753	transcription start site region 38753			1551 bp upstream