rs27515983 SNP Detail

Summary

• ID
  rs27515983
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119669880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGAGAGC TGGGCCCTTA
  AAAGAGATTT GGAGAGGGCC CAAATCTCCT TCTGAATTCC TGACAGCTTG ACCATATTAT
  GATTCTTGCT TGATGCTGTA GTGTTAGAGG GAGAGGAGCA GCAGAAAATA AAAATTGTTT
  TCTCGAGTCT TCCTGATTTT TTAATGTGAA GAAAGAATGC TTTCGTCAGG AACTCTTCCT
  R
  GATCTTTCAC CAGGGATAGA GACATCTTTC ATTTTTTCAC AACATGCGGC TCCTCTTCCT
  TTAACACCAC AGTGGCAGAC ACTCCTGCCT CCTTTGCACC CCCCCCCTCC CCAGGTCTGG
  GTAGAAGAGA GGCTTTGAGA AGAGTGACAG GCTCCCTGTG GTAGGTCTGT GCCTTGTCAC
  CAAGCCTCCT AAGCTCAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	NOD/ShiLtJ
ss37715109	NES09198899	PERLEGEN	MM_PANEL2	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	NOD/ShiLtJ
rs27515983					SNP	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37715109	NES09198899	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119669880 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
Rr398435	regulatory region 398435			159 bp upstream
Rr398436	regulatory region 398436			717 bp upstream
Rr598655	regulatory region 598655			within coordinates
Rr598656	regulatory region 598656			1322 bp proximal
Rr598657	regulatory region 598657			1823 bp proximal
Tssr38753	transcription start site region 38753			373 bp upstream
Tssr38754	transcription start site region 38754			1624 bp upstream
Tssr38755	transcription start site region 38755			1692 bp upstream
Tssr38756	transcription start site region 38756			1821 bp upstream
Tssr38757	transcription start site region 38757			1850 bp upstream