rs27515971 SNP Detail

Summary

• ID
  rs27515971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119691038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGACCATA CTGAAACCTG
  TGGGTTCTCT TGTTTGCCTC TGCTTGCCCT AACAAGGTTA GCTTCCGTCC TGCAAAATGG
  CTTGCAAGGG GGCTCTGACA GCATAGTTTT CAGATTGCTT GATGAAGCCG GGCTATCTGT
  TACAGTTAGA CAACACTTCA TGATTTTTTT CCAAGGAGAC ATTCTTGGGA ACTTCAGGAA
  Y
  CAACCTGTGG AAAGCCAGCG GAGCCTTTGC TGTTGCTTTG GAGCAGAGGA CAGTTCTAGC
  CTCAGTAGCC CTGGCTGTGG TCATTGGCTT TAGGCTACAA TGTTTAGAAA CTTGGTGTTT
  GGATGTGTGG ATGGCGGTAT AACTGGAACA CATGTTGAGG CTCTGCACTG ACATTTGGGA
  GTGGCTGCAT GTTGTAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss37715097	NES09198526	PERLEGEN	MM_PANEL2	f	SNP	C		T	T		C	T	T	T	T	C
ss45638476	mCV25416457	ABI	CRAMUS_MOUSE	f	SNP		C	T		T
ss147336474	ENSMUSSNP2926471	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs27515971					SNP	C	C	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37715097	NES09198526	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119691038 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr377081	regulatory region 377081			within coordinates
Rr598660	regulatory region 598660			771 bp proximal