rs27515967 SNP Detail

Summary

• ID
  rs27515967
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119692754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTGCCCT CCTGGATGAG
  CTCAGGGCAC GGCATCCCTG CTGAGTACTC GGACTACTCT CCCCTCCCCT TTCTCTTGGC
  TGGGAAGACA TCTGGGAGAA TTGTGATCTA TACACGCCCC AGATCATGAG GTGGGTGGAG
  GAAGCATAGC TTGGGGTTCT CTACACAGTG GTCAGCTTGC TCTTGCAAGT ACAGCTTAAG
  Y
  ACAGATTGGC TTAACCAGAT TTAGGCTATG TAGGGCCCCA GAGCAGAGGG GTCAGTGACC
  AGAGGACATA TGTCAGTGCC TTGTCGTGAG GATGCCTTCT TTGCTTATTC ACCTTTTACA
  CACCCATGTC TTTCTCTTCA CTTCCTGTCC TTCCTTTGCT TTTTTTTTTT TCTTCTTCAG
  CCTTTGAGCT TCAACATGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37715093	NES09198450	PERLEGEN	MM_PANEL2	f	SNP	T		C	C		C	C	C	C	C	T
ss45657949	mCV25416248	ABI	CRAMUS_MOUSE	f	SNP		T	C		C	C
ss147336503	ENSMUSSNP219495	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	C57BL/6J	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27515967					SNP	T	T	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37715093	NES09198450	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119692754 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr377081	regulatory region 377081			536 bp downstream
Rr598660	regulatory region 598660			924 bp distal