rs27515966 SNP Detail

Summary

• ID
  rs27515966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:119693015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGACATA TGTCAGTGCC
  TTGTCGTGAG GATGCCTTCT TTGCTTATTC ACCTTTTACA CACCCATGTC TTTCTCTTCA
  CTTCCTGTCC TTCCTTTGCT TTTTTTTTTT TCTTCTTCAG CCTTTGAGCT TCAACATGAA
  ACAGAGATCA CGCTGTGCTT CAGTGCATCA AGGCAAGTTT GGGATGGGGC AGAGCTGTTG
  Y
  GTCCTTGATA CCCACTTGCT GGTTCTGTGT CAACTCTGTT TATAAGGAAT TGATTGACCA
  GCTATTTGGT GTCTCTGATG AGATCTTAGG AAAGTCACAG CCAGAGTCAT GAGCTACTCT
  CAGTGGATGG ATATGCGGTA TGCATTTTTT TTTTTTAAAT AAAAAGCTCT CGTGGTTGCA
  CTCATTATAA AAGATGTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37715092	NES09198451	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27515966					SNP	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37715092	NES09198451	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:119693015 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hivep3	human immunodeficiency virus type I enhancer binding protein 3			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Rr377081	regulatory region 377081			797 bp downstream
Rr598660	regulatory region 598660			1185 bp distal