rs27515609 SNP Detail

Summary

• ID
  rs27515609
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111723618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAAAAC TGTGGATGTT
  ATTAGGAGAC ATTTTAAAAT ATTTTTTTGC AAAATTCTAT ATATTGTTAC AAAATCCAGT
  TTTCTTTTTG CGGATATTGT ATCCTACCAT TTTAATGTAA TATTCATTTT CATATATTCT
  TTATATTTTG AAGTAATATG AGAATTTTGC CTTGACTCTC TGCTATTGCC TTGATATATC
  R
  CAACATAATT TAACAGTTAA TAATTTTTGG CTACTAGGTT GTTTCCTAGT TCCTTTAGTA
  TATGTTTAAA CTTGTAAAAA GTGTGTTTGC ACCAAGTGCA GGTTACAGGA CCAGCTTATG
  TAGTGTTCAT GCTGTAAGTA GCTGACAGAA GGGTGGCTCT TCCTTGTTTG TTTGTTCCAG
  AACTTTCTAC TGTTGACATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37704039	NES09213939	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	A	G	G		A	A	G
ss321263051	CHEV_4_111539026	CHEVERUD	SCREENING_POP	f	SNP								G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27515609					SNP	G	G	A	G	A	G	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37704039	NES09213939	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111723618 () rs orientation: forward

Symbol	Name	Function Class
Rr597504	regulatory region 597504	268 bp proximal
Rr597505	regulatory region 597505	1566 bp proximal