rs27515597 SNP Detail

Summary

• ID
  rs27515597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111724904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAATATCA ATTCATAAAG
  CACCAAACTG TCTGTTATGT GATGTCTAAT GAGTGCAGTC TTATTATCTG AAATTATCAA
  ATAGTTATAT TTTAACTTGT TCTAGCAATT AATTCAACCT GGTCCCCTGA AATATACTGA
  GCATATTTTA TGTTTTCAGA TTTATTAAAA CATTATTGAA AATTGCATAT ATTTGAGGCA
  Y
  GTCATGCGAT CCTTTGTAGT CACTGGACAA TTCTGGCTTG CCAATGTGAA CAGCAGTTGT
  TGGACTAGAG AAGAGACCTT TATATCTATG GCGTGGCCTC CTCTAAGCTA GCTTGTGAAG
  TGGAAACTTA AGGGTTCTTT GGAAAGTAAT AGATGGTGTT TTGCTGGGGA AAACACCTGA
  GGGAACATTT CACTGAAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37704027	NES09213953	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27515597					SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37704027	NES09213953	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111724904 () rs orientation: forward

Symbol	Name	Function Class
Rr597504	regulatory region 597504	641 bp distal
Rr597505	regulatory region 597505	280 bp proximal