rs27515596 SNP Detail

Summary

• ID
  rs27515596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111724948 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAATGAGT GCAGTCTTAT
  TATCTGAAAT TATCAAATAG TTATATTTTA ACTTGTTCTA GCAATTAATT CAACCTGGTC
  CCCTGAAATA TACTGAGCAT ATTTTATGTT TTCAGATTTA TTAAAACATT ATTGAAAATT
  GCATATATTT GAGGCACGTC ATGCGATCCT TTGTAGTCAC TGGACAATTC TGGCTTGCCA
  R
  TGTGAACAGC AGTTGTTGGA CTAGAGAAGA GACCTTTATA TCTATGGCGT GGCCTCCTCT
  AAGCTAGCTT GTGAAGTGGA AACTTAAGGG TTCTTTGGAA AGTAATAGAT GGTGTTTTGC
  TGGGGAAAAC ACCTGAGGGA ACATTTCACT GAAGCAGACA CAGGTGAAAG GATGTTCTGC
  CAAAGCAAGC ATGTAAAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37704026	NES09213954	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27515596					SNP	A	A	A	G	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37704026	NES09213954	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111724948 () rs orientation: forward

Symbol	Name	Function Class
Rr597504	regulatory region 597504	685 bp distal
Rr597505	regulatory region 597505	236 bp proximal