rs27515594 SNP Detail

Summary

• ID
  rs27515594
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111726531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTTATA TATGAGAGTT
  TGTGCATTTT TACCTTTCTG AAGAGACCTG AGATGAGATT AACTTAAAAG ATATGTGGTG
  CATAGCTTGC TGTGATTCAA AGACAGAAAC AAGCCATAGA AAACTAAATC AATTAAGATT
  ACCCCCCTAA AATGTTCTGA ATGGGAGCTC CCCCGTTCCC AATCTTGACT CATTCTATCC
  R
  TGCATGTCCT TGCATAAAGT CCCAAATATA TTTATTTTGA TTATCGTCAT CTCTCTTCTG
  TGACGACGCA GTGTTTTCAC TGGACACATT TTCCTAAAGG TTTTGTGGTC CTGGTTTAAA
  GAGATGTTTT TTTGCCTTCC TCTTTTATGT CTAGAAGCTA GACTATTTAG AGCCGGGTAG
  TTGATTAGAC TCAGAAAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ
ss37704024	NES09213870	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	G	A	A	A	G		A	A
ss147210024	ENSMUSSNP3337914	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ
rs27515594					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37704024	NES09213870	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111726531 () rs orientation: forward

Symbol	Name	Function Class
Rr597505	regulatory region 597505	1195 bp distal