rs27515593 SNP Detail

Summary

• ID
  rs27515593
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111726583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGATTAA CTTAAAAGAT
  ATGTGGTGCA TAGCTTGCTG TGATTCAAAG ACAGAAACAA GCCATAGAAA ACTAAATCAA
  TTAAGATTAC CCCCCTAAAA TGTTCTGAAT GGGAGCTCCC CCGTTCCCAA TCTTGACTCA
  TTCTATCCAT GCATGTCCTT GCATAAAGTC CCAAATATAT TTATTTTGAT TATCGTCATC
  W
  CTCTTCTGTG ACGACGCAGT GTTTTCACTG GACACATTTT CCTAAAGGTT TTGTGGTCCT
  GGTTTAAAGA GATGTTTTTT TGCCTTCCTC TTTTATGTCT AGAAGCTAGA CTATTTAGAG
  CCGGGTAGTT GATTAGACTC AGAAAATGGG ATGACCATGA ACTTGGCTGC AGATACAGAA
  ACATAGCTAG GGGCCAACAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37704023	NES09213873	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A		T	T	T
ss147210028	ENSMUSSNP2041437	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27515593					SNP	T	T	T	T	T	T	T	T	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37704023	NES09213873	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111726583 () rs orientation: forward

Symbol	Name	Function Class
Rr597505	regulatory region 597505	1247 bp distal