rs27515592 SNP Detail

Summary

• ID
  rs27515592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:111726595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAAGATAT GTGGTGCATA
  GCTTGCTGTG ATTCAAAGAC AGAAACAAGC CATAGAAAAC TAAATCAATT AAGATTACCC
  CCCTAAAATG TTCTGAATGG GAGCTCCCCC GTTCCCAATC TTGACTCATT CTATCCATGC
  ATGTCCTTGC ATAAAGTCCC AAATATATTT ATTTTGATTA TCGTCATCTC TCTTCTGTGA
  Y
  GACGCAGTGT TTTCACTGGA CACATTTTCC TAAAGGTTTT GTGGTCCTGG TTTAAAGAGA
  TGTTTTTTTG CCTTCCTCTT TTATGTCTAG AAGCTAGACT ATTTAGAGCC GGGTAGTTGA
  TTAGACTCAG AAAATGGGAT GACCATGAAC TTGGCTGCAG ATACAGAAAC ATAGCTAGGG
  GCCAACAATT ATTACCAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37704022	NES09213876	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T	C	C	C	T		C	C	C
ss147210034	ENSMUSSNP2041232	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27515592					SNP	C	C	C	C	C	C	T	C	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37704022	NES09213876	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111726595 () rs orientation: forward

Symbol	Name	Function Class
Rr597505	regulatory region 597505	1259 bp distal