rs27513015 SNP Detail

Summary

• ID
  rs27513015
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117333319 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAATCGCA CAATGAAGTT
  TACCTCAGGA GTCAAGTCTC TTTCAAATGC TCGCTCTTTC CAACCCTCCC TGTCCAGCTC
  TGACTGACTC AGGTCCTTTC CAGTCCTTCC CAGTTCCATA CAACCCTCTT GGTACGGAAG
  GCATGGCAAG GCTATTACAG CCTAAAGGAG GGCAGAAAGC CTTTGTCATC TCCATTCTGG
  Y
  CGTCATCCCT CCAGCCGGGA TGGCATGCTT CTGACCTAAA TTTGCCCACA CAGAAGAGGA
  AGGAAAACCA GAAAATGAAA ACATAAAGGC TCCCCAAAAC TTTGCTGAAA AGCAAAGCAA
  TGGGTGAATT CCTCTCGCAG GGCGCCTGGA CACTTTTGTG TTGATAGATA GTGGCCTGTG
  AACCTGCCCT CAGACAGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37692145	NES09212728	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27513015					SNP	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692145	NES09212728	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117333319 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr598150	regulatory region 598150			1519 bp distal
Rr598151	regulatory region 598151			within coordinates