rs27513008 SNP Detail

Summary

• ID
  rs27513008
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117335806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCAGGCTG GGACAACGGT
  TGGCTCTGCT ATCTTTTCAC TTCTTCAATA CTCTTGGCTC TAACCTACCC TGTGAATGGC
  AAGCCTGAGC AATGTTCCTC CCACTGGAAA CTTTGCCAGG AGATGGTGCC AGGAATCTAG
  GTGCTTAGTG AAGGCCTGCC AAGTACTCTA AAGTCGTGAG ACCTATCATA TTTCTGTGGA
  K
  TACCAAGTAT AGACTTGACC ATGAACTTTG GTAAAAAGAC AAGGGCCCTT ATCTACCTGA
  CTAAACACCA GCATGATAAG GCCTTTCCTT CTCTCAGGAA AAACATTGCT GGGTCCCTTA
  TTCTCTGCCA AGTTTGGTTC TAGCTTCTGC TGGGATTTCT GATATTAAGA TACACGTTAT
  ATGTCATCAG ATACTATTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37692138	NES09212681	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27513008					SNP	G	G	T	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692138	NES09212681	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117335806 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr598151	regulatory region 598151			315 bp distal
Rr598152	regulatory region 598152			1401 bp proximal