rs27513002 SNP Detail

Summary

• ID
  rs27513002
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117336027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAACTTTG GTAAAAAGAC
  AAGGGCCCTT ATCTACCTGA CTAAACACCA GCATGATAAG GCCTTTCCTT CTCTCAGGAA
  AAACATTGCT GGGTCCCTTA TTCTCTGCCA AGTTTGGTTC TAGCTTCTGC TGGGATTTCT
  GATATTAAGA TACACGTTAT ATGTCATCAG ATACTATTTT ATAGTGACTT ATCTTTGGAA
  R
  GCTACTTTTC CGTTTTGTGT GTTTGTTTGT TTTGAGACAC TATGTAGCCA TGATTGGTCT
  GTTGCTCCCT ATGTAGAATA AGGCTGTTCT CAAACTCATA GAGATCTACC TGCCTCTGCC
  TCCAGAGTAT TGGGATTTCA GGTATGAATC ACCATGCCTG GCTTAGAAGC TACTTTAAAA
  GCAGGGTCCT CTCTGGTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37692132	NES09212687	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27513002					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37692132	NES09212687	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117336027 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rnf220	ring finger protein 220			Intron
				Noncoding-Transcript-Variant
Rr598151	regulatory region 598151			536 bp distal
Rr598152	regulatory region 598152			1180 bp proximal
Rr598153	regulatory region 598153			1833 bp proximal