rs27512602 SNP Detail

Summary

• ID
  rs27512602
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117116355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGATCAGT GGGGAATCCC
  TGACCACCAG CTTTGCCCCA GGCTCACTTA GAGGCCCTGC CTCAAGGGAA CAAGGTGGCG
  AGTGACAGAG AAGAACTCTT GATGGCCTTC TCTGGCTTCC ATATGTGTGT ATGGATGCCT
  ATGCCCATAC AAGTGTGCGT ACCACATACA CATATACCAT AATCACACAT ATACAGAAGC
  R
  TTCACTGAAG CATTCTCTCC CTCTCTCTCT GCTCCCTCCC CCTTTGGGCA CACACACGCA
  CGCACACTTT TTGTTTTTAG ATGGTAAAAG TTTTAAAATG TGTTGAGTAC AAGTACCATA
  TCAAAGGTGT GGTTTATAGT CTGTGGCGTT TCCTCCCCCC TCTCCCCCTT CTTCCCTCCT
  CCCCCTTCTC TCTTCTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37693033	NES09219409	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27512602					SNP	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37693033	NES09219409	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117116355 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr598098	regulatory region 598098			930 bp proximal
Tmem53	transmembrane protein 53			Intron
				Noncoding-Transcript-Variant