rs27512579 SNP Detail

Summary

• ID
  rs27512579
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117123723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTTTCTT AAAGAGAGTA
  ACGCCAGCCT GTTTTATGCT GTAAGGAGCG TGTCCTGTGT ACCTTTTGTC GAAACAGCTC
  TAGTCAGCTA CTGTGTGCCG CCTGATGCCA CCTCGTCATG TTACTACGTT TTCATTGCAT
  ACCGTGTACA GTCCATGCCC AGATACCCAA GTCGAATGTC CCCAAAGCAT CTTACAGAGC
  W
  GATATGTCCA ACCCTGGAGT CCAATCCATG TCGCACACTG CAGCTAACTC TTCTGTTCCC
  CCAGCCTCCC CATCCTTCCT TGTGCTTTAA AGCAGGCCTT GCTTTTGGCT TCCTGGGGAG
  ACTGAGCTGC AAGGGGATAG TGTAAGAGTA GAATCCCACC TGCTGCGGGA GTGGGGGAGG
  CTAAAAGCCT CTCTGAGATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37693010	NES09219262	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27512579					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37693010	NES09219262	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117123723 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14657	CpG island 14657			1430 bp proximal
Rr598100	regulatory region 598100			835 bp proximal
Rr598101	regulatory region 598101			953 bp proximal
Rr598102	regulatory region 598102			1669 bp proximal
Tmem53	transmembrane protein 53			Intron
				Noncoding-Transcript-Variant