rs27512573 SNP Detail

Summary

• ID
  rs27512573
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117124831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGACAGGG AAGGGGGAAC
  AGGACTGTGA TGTGGAGCTA GCTCATCTGC ACCCTCTGGT GGTCAAGACT GGGACCTGCA
  TGCCATCTCT TGCTCTTTTG GGGATGCCTA TTTGTGTCTA GGAACTAAGG GCAAGGCACA
  GTGGTTGCAG CTTGGTGTAC CTAAGCCCCA AGGCCTTAAC TATGCAAGGT CTGAGAAAAC
  R
  AGAGGGAAGA TACTTTCTTT TGGTAGAATC AGATGTCTCC AAAGCATGTT CTTAGCTCCA
  GGCTTCAAAT ACCATCCCAG GCTGAAAAGT CTAGACAGCA TGAAGCCCGG GGTTTTTGGA
  AACAGGCCTT GAGTGTACTT CCACTCCTGG GAGGCACCTA TGCCTGCAGC TGGCAAGCTA
  GTTACAACAG AACCCTGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37693004	NES09219205	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27512573					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37693004	NES09219205	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117124831 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14657	CpG island 14657			322 bp proximal
Rr598100	regulatory region 598100			within coordinates
Rr598101	regulatory region 598101			134 bp distal
Rr598102	regulatory region 598102			561 bp proximal
Tmem53	transmembrane protein 53			Intron
				Noncoding-Transcript-Variant