rs27512299 SNP Detail

Summary

• ID
  rs27512299
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114293784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCACCCT GCACTAAGGA
  GTCATAGGTA AGCTCTGAGG TCAGCTGGGC TCAGCTAGTG CTGGGCAGCA AGTATAATCC
  CATTATGCAA TACATAAGTA GATACACCTC TGTGTGCATG CAGCCCCAGC CTGGGCTCCT
  AAGCCCCTCA TTCATGAGAA AATCCCATAA CTGAAATCCC AAGGCTATTT ACTATTAACA
  W
  ACAAACAACA GACAAACCAA ATCAAGCAAA CAACAACCAC AGAAAAACCA CCAAAAACAT
  ATTGGAGGCA AAACTGTGGA GATTTCTCAT AGGAACAAAT AGCTTGTCCC CAAATAAATG
  GTCCTATTAT AGGTTAGGTA TAAACATGGA GAAGTAAAGA GCTAAATAGT CTAAAGCCCA
  TACTCTGTTC TTGAGCCAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37700040	NES09214993	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	T	A	T	A	A	A	A		A	T	A	A		A
ss321274062	CHEV_4_114109192	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27512299					SNP	A	A	T	T	A	T	A	A	A	A	T	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37700040	NES09214993	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114293784 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597570	regulatory region 597570			819 bp distal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant