rs27512294 SNP Detail

Summary

• ID
  rs27512294
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114294119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTATAAA CATGGAGAAG
  TAAAGAGCTA AATAGTCTAA AGCCCATACT CTGTTCTTGA GCCAGCTTTG TTGACAAATT
  CCTTGTCTGG GAAATGGAGA TGTGATAGGA CCCCCTTCAG GAAGTGCTCT GGAGAAAACA
  ACACATACCT TCCTGTTCTC TCCCCCAGCC CTCACCCCGG AAGCTCTCAG GAGCCATTCC
  R
  CATTCTCCTG TGTGCCTGTC TCTCCATGGT GCTTCTCTTT AAAGCGCCCA TATCATCTTG
  AGACCTCTGT GGCACCATGG CTGTGGTGCA GAATGAGACT CTAAGTGGAT ACCAACTGTT
  TCCAGAAAGG AGATGGAGCA AGAGAGTCTG AAGAGAATTT GAGATGTTTG GCTGCGGCCT
  TTGTTGGAGT AGAAGGTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37700035	NES09214998	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27512294					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37700035	NES09214998	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114294119 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597570	regulatory region 597570			1154 bp distal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant