rs27512291 SNP Detail

Summary

• ID
  rs27512291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:114294303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAGGAGC CATTCCGCAT
  TCTCCTGTGT GCCTGTCTCT CCATGGTGCT TCTCTTTAAA GCGCCCATAT CATCTTGAGA
  CCTCTGTGGC ACCATGGCTG TGGTGCAGAA TGAGACTCTA AGTGGATACC AACTGTTTCC
  AGAAAGGAGA TGGAGCAAGA GAGTCTGAAG AGAATTTGAG ATGTTTGGCT GCGGCCTTTG
  Y
  TGGAGTAGAA GGTGAAGAAA AGCCACTGGG AGAGGCCTAG CTGGCCAGAA TCATCCATGT
  GTCTCCTAGG AGCCTGTTCC CTACTGTCAT CTACCGATTT CAGTTCTTTT GGCATCCATT
  GGCCTTTTCT GTATTTCTGC ATCTCTAAGT CACTGAAATC CTTTGGAACT GTAACTTGAA
  TTTTGTAACT GGGCAAACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37700032	NES09215002	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27512291					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37700032	NES09215002	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:114294303 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597570	regulatory region 597570			1338 bp distal
Trabd2b	TraB domain containing 2B			Intron
				Noncoding-Transcript-Variant